{"id":3369,"date":"2021-09-20T17:40:50","date_gmt":"2021-09-20T15:40:50","guid":{"rendered":"https:\/\/www.pedagogie.ac-nice.fr\/svt\/?p=3369"},"modified":"2022-04-15T12:02:12","modified_gmt":"2022-04-15T10:02:12","slug":"etudier-un-fragment-de-membrane-plasmique-comportant-un-recepteur-proteique-avec-libmol","status":"publish","type":"post","link":"https:\/\/www.pedagogie.ac-nice.fr\/svt\/?p=3369","title":{"rendered":"Etudier un fragment de membrane plasmique (comportant un r\u00e9cepteur prot\u00e9ique) avec Libmol"},"content":{"rendered":"<p style=\"text-align: right;\"><em>par Philippe Cosentino<\/em><\/p>\n<p>Dans le programme d&rsquo;enseignement scientifique de la classe de premi\u00e8re, la membrane plasmique fait partie des notions exigibles.<\/p>\n<p>Extrait du B.O. : <em>\u00ab\u00a0La cellule est un espace s\u00e9par\u00e9 de l\u2019ext\u00e9rieur <\/em><em>par une membrane plasmique. Cette membrane est constitu\u00e9e d\u2019une bicouche lipidique et de prot\u00e9ines.\u00a0\u00bb<\/em><\/p>\n<p>Il est tout \u00e0 fait possible d&rsquo;utiliser l&rsquo;application de visualisation mol\u00e9culaire Libmol pour observer et manipuler cette membrane (bicouche + prot\u00e9ines) \u00e0 l&rsquo;\u00e9chelle mol\u00e9culaire.<\/p>\n<p>En quelques clics, on obtient ceci :<\/p>\n<div id=\"attachment_3370\" style=\"width: 600px\" class=\"wp-caption alignnone\"><a href=\"https:\/\/www.pedagogie.ac-nice.fr\/svt\/?attachment_id=3370\" rel=\"attachment wp-att-3370\"><img loading=\"lazy\" decoding=\"async\" aria-describedby=\"caption-attachment-3370\" class=\"wp-image-3370\" src=\"https:\/\/www.pedagogie.ac-nice.fr\/svt\/wp-content\/uploads\/sites\/5\/2021\/09\/membrane-1024x759.jpg\" alt=\"\" width=\"600\" height=\"445\" srcset=\"https:\/\/www.pedagogie.ac-nice.fr\/svt\/wp-content\/uploads\/sites\/5\/2021\/09\/membrane-1024x759.jpg 1024w, https:\/\/www.pedagogie.ac-nice.fr\/svt\/wp-content\/uploads\/sites\/5\/2021\/09\/membrane-300x222.jpg 300w, https:\/\/www.pedagogie.ac-nice.fr\/svt\/wp-content\/uploads\/sites\/5\/2021\/09\/membrane-768x569.jpg 768w, https:\/\/www.pedagogie.ac-nice.fr\/svt\/wp-content\/uploads\/sites\/5\/2021\/09\/membrane-436x323.jpg 436w, https:\/\/www.pedagogie.ac-nice.fr\/svt\/wp-content\/uploads\/sites\/5\/2021\/09\/membrane.jpg 1035w\" sizes=\"auto, (max-width: 600px) 100vw, 600px\" \/><\/a><p id=\"caption-attachment-3370\" class=\"wp-caption-text\">Capture d&rsquo;\u00e9cran du logiciel Libmol<\/p><\/div>\n<p>Pour obtenir ce r\u00e9sultat dans Libmol :<\/p>\n<ul>\n<li>&nbsp;s\u00e9lectionner les prot\u00e9ines<\/li>\n<li>repr\u00e9senter en ruban, colorer en vert \u00e0 l&rsquo;aide de la palette<\/li>\n<li>tant que les prot\u00e9ines s\u00e9lectionn\u00e9es, ajouter une surface et r\u00e9gler son opacit\u00e9 \u00e0 50%<\/li>\n<li>s\u00e9lectionner le dernier phospholipide (POPE) dans l&rsquo;onglet s\u00e9quence, et le repr\u00e9senter en sph\u00e8res<\/li>\n<\/ul>\n<p>Cette activit\u00e9 peut se faire en utilisant un ordinateur, mais \u00e9galement \u00e0 partir d&rsquo;une tablette en donnant \u00e0 l&rsquo;\u00e9l\u00e8ve le \u00ab\u00a0lien direct\u00a0\u00bb vers le mod\u00e8le (il s&rsquo;agit d&rsquo;un lien raccourci).<\/p>\n<p>&nbsp;<\/p>\n<h2>Liens<\/h2>\n<p><a href=\"https:\/\/libmol.org\/\">Libmol version en ligne<\/a><\/p>\n<p><a href=\"https:\/\/libmol.org\/downloads\/\" target=\"_blank\" rel=\"noopener\">Libmol version ex\u00e9cutable<\/a><\/p>\n<p><a href=\"https:\/\/bit.ly\/3BJ7uhg\" target=\"_blank\" rel=\"noopener\">Lien direct ouvrant le mod\u00e8le directement dans Libmol : bit.ly\/3BJ7uhg<\/a><\/p>\n<p><a href=\"https:\/\/bit.ly\/3yS9CS4\" target=\"_blank\" rel=\"noopener\">Lien direct ouvrant le mod\u00e8le en plein \u00e9cran, sans le menu lat\u00e9ral (id\u00e9al pour tablettes) :<\/a><br \/>\n<a href=\"https:\/\/bit.ly\/3yS9CS4\" target=\"_blank\" rel=\"noopener\">bit.ly\/3yS9CS4<\/a><\/p>\n<p><a href=\"https:\/\/cosphilog.fr\/dl\/mol\/membrane-rhodopsine.pdb\" target=\"_blank\" rel=\"noopener\">Mod\u00e8le \u00e0 t\u00e9l\u00e9charger au format .pdb<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"<p>par Philippe Cosentino Dans le programme d&rsquo;enseignement scientifique de la classe de premi\u00e8re, la membrane plasmique fait partie des notions exigibles. Extrait du B.O. : \u00ab\u00a0La cellule est un espace s\u00e9par\u00e9 de l\u2019ext\u00e9rieur par une membrane plasmique. Cette membrane est constitu\u00e9e d\u2019une bicouche lipidique et de prot\u00e9ines.\u00a0\u00bb Il est tout \u00e0 fait possible d&rsquo;utiliser l&rsquo;application &hellip; <\/p>\n<p><a class=\"more-link btn\" href=\"https:\/\/www.pedagogie.ac-nice.fr\/svt\/?p=3369\">Lire la suite<\/a><\/p>\n","protected":false},"author":74,"featured_media":3370,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"ngg_post_thumbnail":0,"footnotes":""},"categories":[133,8,77,357],"tags":[196,167,421,382,422],"class_list":["post-3369","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-activites-sappuyant-sur-le-numerique","category-logiciels","category-modeles-moleculaires","category-premiere","tag-enseignement-scientifique","tag-libmol","tag-membrane","tag-molecule","tag-proteine","nodate","item-wrap"],"rttpg_featured_image_url":{"full":["https:\/\/www.pedagogie.ac-nice.fr\/svt\/wp-content\/uploads\/sites\/5\/2021\/09\/membrane.jpg",1035,767,false],"landscape":["https:\/\/www.pedagogie.ac-nice.fr\/svt\/wp-content\/uploads\/sites\/5\/2021\/09\/membrane.jpg",1035,767,false],"portraits":["https:\/\/www.pedagogie.ac-nice.fr\/svt\/wp-content\/uploads\/sites\/5\/2021\/09\/membrane.jpg",1035,767,false],"thumbnail":["https:\/\/www.pedagogie.ac-nice.fr\/svt\/wp-content\/uploads\/sites\/5\/2021\/09\/membrane-150x150.jpg",150,150,true],"medium":["https:\/\/www.pedagogie.ac-nice.fr\/svt\/wp-content\/uploads\/sites\/5\/2021\/09\/membrane-300x222.jpg",300,222,true],"large":["https:\/\/www.pedagogie.ac-nice.fr\/svt\/wp-content\/uploads\/sites\/5\/2021\/09\/membrane-1024x759.jpg",436,323,true],"1536x1536":["https:\/\/www.pedagogie.ac-nice.fr\/svt\/wp-content\/uploads\/sites\/5\/2021\/09\/membrane.jpg",1035,767,false],"2048x2048":["https:\/\/www.pedagogie.ac-nice.fr\/svt\/wp-content\/uploads\/sites\/5\/2021\/09\/membrane.jpg",1035,767,false],"graphene_slider":["https:\/\/www.pedagogie.ac-nice.fr\/svt\/wp-content\/uploads\/sites\/5\/2021\/09\/membrane-182x400.jpg",182,400,true],"graphene_featured_image":["https:\/\/www.pedagogie.ac-nice.fr\/svt\/wp-content\/uploads\/sites\/5\/2021\/09\/membrane-436x323.jpg",436,323,true],"post-thumbnail":["https:\/\/www.pedagogie.ac-nice.fr\/svt\/wp-content\/uploads\/sites\/5\/2021\/09\/membrane-1035x200.jpg",1035,200,true],"advps-thumb-one":["https:\/\/www.pedagogie.ac-nice.fr\/svt\/wp-content\/uploads\/sites\/5\/2021\/09\/membrane.jpg",297,220,false]},"rttpg_author":{"display_name":"Philippe COSENTINO","author_link":"https:\/\/www.pedagogie.ac-nice.fr\/svt\/?author=74"},"rttpg_comment":0,"rttpg_category":"<a href=\"https:\/\/www.pedagogie.ac-nice.fr\/svt\/?cat=133\" rel=\"category\">Activit\u00e9s s'appuyant sur le num\u00e9rique<\/a> <a href=\"https:\/\/www.pedagogie.ac-nice.fr\/svt\/?cat=8\" rel=\"category\">Logiciels<\/a> <a href=\"https:\/\/www.pedagogie.ac-nice.fr\/svt\/?cat=77\" rel=\"category\">Mod\u00e8les mol\u00e9culaires<\/a> <a href=\"https:\/\/www.pedagogie.ac-nice.fr\/svt\/?cat=357\" rel=\"category\">Premi\u00e8re<\/a>","rttpg_excerpt":"par Philippe Cosentino Dans le programme d&rsquo;enseignement scientifique de la classe de premi\u00e8re, la membrane plasmique fait partie des notions exigibles. Extrait du B.O. : \u00ab\u00a0La cellule est un espace s\u00e9par\u00e9 de l\u2019ext\u00e9rieur par une membrane plasmique. Cette membrane est constitu\u00e9e d\u2019une bicouche lipidique et de prot\u00e9ines.\u00a0\u00bb Il est tout \u00e0 fait possible d&rsquo;utiliser l&rsquo;application\u2026","post_mailing_queue_ids":[],"_links":{"self":[{"href":"https:\/\/www.pedagogie.ac-nice.fr\/svt\/index.php?rest_route=\/wp\/v2\/posts\/3369","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.pedagogie.ac-nice.fr\/svt\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.pedagogie.ac-nice.fr\/svt\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.pedagogie.ac-nice.fr\/svt\/index.php?rest_route=\/wp\/v2\/users\/74"}],"replies":[{"embeddable":true,"href":"https:\/\/www.pedagogie.ac-nice.fr\/svt\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=3369"}],"version-history":[{"count":6,"href":"https:\/\/www.pedagogie.ac-nice.fr\/svt\/index.php?rest_route=\/wp\/v2\/posts\/3369\/revisions"}],"predecessor-version":[{"id":3576,"href":"https:\/\/www.pedagogie.ac-nice.fr\/svt\/index.php?rest_route=\/wp\/v2\/posts\/3369\/revisions\/3576"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/www.pedagogie.ac-nice.fr\/svt\/index.php?rest_route=\/wp\/v2\/media\/3370"}],"wp:attachment":[{"href":"https:\/\/www.pedagogie.ac-nice.fr\/svt\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=3369"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.pedagogie.ac-nice.fr\/svt\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=3369"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.pedagogie.ac-nice.fr\/svt\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=3369"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}